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RunningFromCottontail2WithSlurm

Submitting and Monitoring Jobs

Jobs are submitted with the command:

 
   sbatch jobname.sh

To see all running jobs:

 
   squeue

To see jobs on a given queue:

 
   squeue | grep exx96

Your own jobs can be monitored with:

 
   squeue --me

To cancel a running job (get process number from squeue --me):

 
   scancel process_number

To check which GPUs are running jobs:

   ssh n## gpu-info

Slurm Script Reference Table

Amber Version	Queue	Resource	Script Link	Projects Using
Amber18	mwgpu	CPU	HERE	Ribosome Modifications
Amber18	exx96	GPU	HERE	Ribosome Modifications
Amber20	mwgpu	CPU	HERE
Amber20	exx96	GPU	HERE
Amber22	mwgpu	CPU	HERE	I-34, G-34, E Landscape, tRNA Mods
Amber22	exx96	GPU	HERE	I-34, G-34, E Landscape, tRNA Mods

Additional Resources
Wesleyan's slurm wiki