Amber18 CPU Run on mwgpu Template (Energy Minimization or cpptraj)
#!/bin/bash
#SBATCH --job-name="18mwCPU"
#SBATCH --output=out_18mwCPU
#SBATCH --error=err_18mwCPU
#SBATCH -N 1
#SBATCH --partition=mwgpu
#SBATCH -B 1:1:1
#SBATCH --cpus-per-gpu=1
# env
export PATH=/home/apps/CENTOS7/amber/amber18/bin:$PATH
export LD_LIBRARY_PATH=/home/apps/CENTOS7/amber/amber18/lib:/home/apps/CENTOS7/amber/amber18/lib64:$LD_LIBRARY_PATH
export PATH=/share/apps/openmpi/1.4.4+intel-12/bin:$PATH
export LD_LIBRARY_PATH=/share/apps/openmpi/1.4.4+intel-12/lib:$LD_LIBRARY_PATH
### AMBER18 ###
source /share/apps/CENTOS7/amber/amber18/amber.sh
### JOB-SPECIFIC COMMANDS ###
# Energy Minimization #
#sander.MPI -O -i /home66/kscopino/BIN/N2_SCRIPTS/emin1.in -p /home66/kscopino/MODIFICATIONS/CGU_ALL/TLEAP/5JUP_N2_CGU_ALL_wat.prmtop -c /home66/kscopino/MODIFICATIONS/CGU_ALL/TLEAP/5JUP_N2_CGU_ALL_wat.rst -r 5JUP_N2_CGU_ALL_emin1.rst -ref /home66/kscopino/MODIFICATIONS/CGU_ALL/TLEAP/5JUP_N2_CGU_ALL_wat.rst -o 5JUP_N2_CGU_ALL_emin1.out
# OR #
# cpptraj #
#cpptraj -i cpptraj_test.in
Path to Above Script
/home66/kscopino/AMBER18/BIN/SLURM_EXAMPLES/18mwCPU.sh
