# This script is to strip the trajectories.
# prmtop file
parm /mindstore/home33ext/kscopino/5JUP_PROTOCOL/PIGGYBACKING/COD1_C2_1S_50PS/5JUP_GC_179C_wat.prmtop [modi3]
# experimental neutral dynamics trajectory
trajin /mindstore/home33ext/kscopino/5JUP_PROTOCOL/PIGGYBACKING/COD1_C2_1S_50PS/COD1_C2_25/mdcrd_nd_25 parm [modi3]
autoimage
strip :WAT
strip :Na+
strip :Cl-
trajout ../mdcrd_nd_25_strip nobox