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# This script is to strip the trajectories.
# prmtop file
parm /mindstore/home33ext/kscopino/5JUP_PROTOCOL/PIGGYBACKING/COD1_C2_1S_50PS/5JUP_GC_179C_wat.prmtop [modi3]

# experimental neutral dynamics trajectory
trajin /mindstore/home33ext/kscopino/5JUP_PROTOCOL/PIGGYBACKING/COD1_C2_1S_50PS/COD1_C2_25/mdcrd_nd_25 parm [modi3]

autoimage
strip :WAT
strip :Na+
strip :Cl-

trajout ../mdcrd_nd_25_strip nobox
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Page last modified on July 14, 2020, at 04:09 PM